BtaALTD0001455-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104478105-104478507:+
Coord C1 exon
chr11:104478105-104478245
Coord A exon
NA
Coord C2 exon
chr11:104478384-104478507
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
CTCCGCCTCCCTTCCTGCAGCCC
3' ss Score
11.21
Exon sequences
Seq C1 exon
ACGACTACGTGCACATCTCCAGCAAGCCATGTGACCTGCACTGCACCACCGTGGATGGCCAGCGGCAGCTCATGGTGCCCGCCCGCGACGGCACGTCCTGCAAGCTCGCCGACCTGCGCGGGGTCTGCGTGTCTGGAAAAT
Seq A exon
NA
Seq C2 exon
CCCATCGGCTGTGACGGGGTTCTCTTCTCCACGCACACGCTGGACAAGTGCGGCGTCTGCCAGGGCGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGCAAAGGGAACACCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-5-6,6-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTCCTGCAAGCTCGC
R:
CGCACTTGTCCAGCGTGT
Band lengths:
102-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development