BtaINT0014351 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104478105-104478507:+
Coord C1 exon
chr11:104478105-104478250
Coord A exon
chr11:104478251-104478383
Coord C2 exon
chr11:104478384-104478507
Length
133 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
3' ss Seq
CTCCGCCTCCCTTCCTGCAGCCC
3' ss Score
11.21
Exon sequences
Seq C1 exon
ACGACTACGTGCACATCTCCAGCAAGCCATGTGACCTGCACTGCACCACCGTGGATGGCCAGCGGCAGCTCATGGTGCCCGCCCGCGACGGCACGTCCTGCAAGCTCGCCGACCTGCGCGGGGTCTGCGTGTCTGGAAAATGTGAG
Seq A exon
GTTGTTCAACACTGTAGCAGAAGCAAGCACCGGTGCCCTCGCGCCCGCCGCCCACCCCGTCGCCCAGGCAGTGGCGGCCCCGGGGTCTCACCTCGGCGCCCTCCCAGCAGCCTCTCCGCCTCCCTTCCTGCAG
Seq C2 exon
CCCATCGGCTGTGACGGGGTTCTCTTCTCCACGCACACGCTGGACAAGTGCGGCGTCTGCCAGGGCGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGCAAAGGGAACACCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTCCAGCAAGCCATGTG
R:
GGTGTTCCCTTTGCGGTAGTT
Band lengths:
251-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development