GgaINT0126463 @ galGal4
Intron Retention
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6976402-6976769:+
Coord C1 exon
chr17:6976402-6976547
Coord A exon
chr17:6976548-6976645
Coord C2 exon
chr17:6976646-6976769
Length
98 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
3' ss Seq
GTACTCCGTGCCTTTTCTAGCCA
3' ss Score
8.09
Exon sequences
Seq C1 exon
ATGACTATGTTCACATTTCTAGCAAGCCCTGTGACCTCCATTGCACCACTGTGGATGGTCAGAGACAATTAATGGTTCAGGCTCGGGATGGAACATCCTGCAAATACACTGATTTCCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq A exon
GTTGTTAAACATTATAGCAAAAATATTGTTAGTAGCATTCAGAGTGGTACAAGGGGTGCAATATTTGCCTGACCCGCAGTACTCCGTGCCTTTTCTAG
Seq C2 exon
CCAATTGGCTGCGATGGCATTCTCTTTTCCACCCACACCTTGGATAAATGTGGTGTTTGCCAAGGAGATGGGAGCAGCTGCACTCATGTGACGGGGAGTTACCGGAAAGGAAACGCTCATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCACCACTGTGGATGGTC
R:
CCATCTCCTTGGCAAACACCA
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]