RnoINT0013634 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5629536-5629936:+
Coord C1 exon
chr3:5629536-5629681
Coord A exon
chr3:5629682-5629812
Coord C2 exon
chr3:5629813-5629936
Length
131 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
3' ss Seq
TCTCTCATTGCTTCTTGCAGCCC
3' ss Score
8.69
Exon sequences
Seq C1 exon
ATGACTACATGCACATCTCCAGTAAGCCGTGTGACCTACACTGCACCACTGTGGACGGCCAACGGCAGCTCATGGTGCCGGCCCGAGACGGCACCTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq A exon
GTTGTTAAGCATTGTACCAAAAGTATGGCCGTTCTCACTGTGCTGGCCGCCCTGCCTGTCTGTCATGAGCAGTGGCGTCCCTGTGCCTGCCACAGCGCCCTCTCAGCAGCCTCTCTCATTGCTTCTTGCAG
Seq C2 exon
CCCATTGGCTGTGATGGAGTGCTCTTCTCCACCCACACACTGGACAAGTGTGGTGTCTGCCAGGGGGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGAAAGGGTGACAATCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATCTCCAGTAAGCCGTG
R:
GTCACCCTTTCGGTAGTTGCC
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]