RnoALTD0001898-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5629536-5629936:+
Coord C1 exon
chr3:5629536-5629676
Coord A exon
chr3:5629677-5629681
Coord C2 exon
chr3:5629813-5629936
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
3' ss Seq
TCTCTCATTGCTTCTTGCAGCCC
3' ss Score
8.69
Exon sequences
Seq C1 exon
ATGACTACATGCACATCTCCAGTAAGCCGTGTGACCTACACTGCACCACTGTGGACGGCCAACGGCAGCTCATGGTGCCGGCCCGAGACGGCACCTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAAT
Seq A exon
GTGAG
Seq C2 exon
CCCATTGGCTGTGATGGAGTGCTCTTCTCCACCCACACACTGGACAAGTGTGGTGTCTGCCAGGGGGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGAAAGGGTGACAATCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-5-7,6-7,7-7-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCACCGACCTGAGAGG
R:
GCAGACACCACACTTGTCCAG
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]