MmuALTD1022789-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27084777-27085174:+
Coord C1 exon
chr2:27084777-27084917
Coord A exon
chr2:27084918-27084922
Coord C2 exon
chr2:27085051-27085174
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
3' ss Seq
TCTCTCATTGCTTCTTGCAGCCC
3' ss Score
8.69
Exon sequences
Seq C1 exon
ATGACTACGTGCACATCTCCAGTAAGCCATGCGACCTACACTGCAGCACCGTGGACGGCCAACGGCAGCTCACGGTGCCGGCCCGAGACGGCACTTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAAT
Seq A exon
GTGAG
Seq C2 exon
CCCATTGGCTGTGATGGAGTACTCTTCTCCACCCACACGCTGGACAAGTGTGGTGTCTGCCAGGGGGACGGGAGCAGCTGCACCCACGTGACAGGCAACTACCGAAAGGGCAACAATCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-10-9,11-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCACCGACCTGAGAGG
R:
CAGACACCACACTTGTCCAGC
Band lengths:
99-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types