GgaALTD0001085-2/2 @ galGal3
Alternative 5'ss
Description
NA
Coordinates
chr17:7649496-7649863:+
Coord C1 exon
chr17:7649496-7649636
Coord A exon
chr17:7649637-7649641
Coord C2 exon
chr17:7649740-7649863
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
3' ss Seq
GTACTCCGTGCCTTTTCTAGCCA
3' ss Score
8.09
Exon sequences
Seq C1 exon
ATGACTATGTTCACATTTCTAGCAAGCCCTGTGACCTCCATTGCACCACTGTGGATGGTCAGAGACAATTAATGGTTCAGGCTCGGGATGGAACATCCTGCAAATACACTGATTTCCGAGGGGTTTGCGTGTCTGGAAAAT
Seq A exon
GTGAG
Seq C2 exon
CCAATTGGCTGCGATGGCATTCTCTTTTCCACCCACACCTTGGATAAATGTGGTGTTTGCCAAGGAGATGGGAGCAGCTGCACTCATGTGACGGGGAGTTACCGGAAAGGAAACGCTCATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-4-6,5-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATTTCCGAGGGGTTTGC
R:
CCATCTCCTTGGCAAACACCA
Band lengths:
105-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]