DreALTD0017502-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20926408-20929114:-
Coord C1 exon
chr2:20928980-20929114
Coord A exon
chr2:20928969-20928979
Coord C2 exon
chr2:20926408-20926531
Length
11 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTGTGTTGTTTTGATTGCAGGTA
3' ss Score
8.74
Exon sequences
Seq C1 exon
ATGATTACATCAACATCTCCAATAAGCCATGTGACCTCCAGTGCACTACAACCACAGGGGAGAGGCAACTACTGGTTCCTGCTCATGATGGGACGTTCTGCAGGGACGGCATTTACCAGGGGGTTTGCATTGAAG
Seq A exon
GCCAGTGTCAG
Seq C2 exon
GTAGTCGGGTGTGATGGGAAACTGTATTCCAGTAAAACCATAGACAAATGTGGAGTCTGTGGTGGAAACGGCGCTTCATGTTATCGTGTCTCAGGAACTTACCGGAAGGGGATCACACAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487-5-10,6-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACTACTGGTTCCTGCTC
R:
CAGTTTCCCATCACACCCGAC
Band lengths:
96-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]