MmuINT0011532 @ mm10
Intron Retention
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27084777-27085174:+
Coord C1 exon
chr2:27084777-27084922
Coord A exon
chr2:27084923-27085050
Coord C2 exon
chr2:27085051-27085174
Length
128 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
3' ss Seq
TCTCTCATTGCTTCTTGCAGCCC
3' ss Score
8.69
Exon sequences
Seq C1 exon
ATGACTACGTGCACATCTCCAGTAAGCCATGCGACCTACACTGCAGCACCGTGGACGGCCAACGGCAGCTCACGGTGCCGGCCCGAGACGGCACTTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq A exon
GTTGTTAAACATTGTACCAAAAGTATGGCTGTTCTCACTGCTGGCCACCCTGCCTGTCAGAGACAGTGGCCCCCCTGTATAGCCAGCCACAGCGCCCTCTCAGCAGCCTCTCTCATTGCTTCTTGCAG
Seq C2 exon
CCCATTGGCTGTGATGGAGTACTCTTCTCCACCCACACGCTGGACAAGTGTGGTGTCTGCCAGGGGGACGGGAGCAGCTGCACCCACGTGACAGGCAACTACCGAAAGGGCAACAATCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040:ENSMUST00000091233:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCACATCTCCAGTAAGC
R:
CCCTTTCGGTAGTTGCCTGTC
Band lengths:
250-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types