HsaINT0004314 @ hg38
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133540598-133541001:+
Coord C1 exon
chr9:133540598-133540743
Coord A exon
chr9:133540744-133540877
Coord C2 exon
chr9:133540878-133541001
Length
134 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
3' ss Seq
CTCCCTCTCCCTTCCTGCAGCCC
3' ss Score
12.86
Exon sequences
Seq C1 exon
ATGACTATGTCCACATCTCCAGCAAACCGTGTGACCTGCACTGTACCACCGTGGACGGCCAGCGGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTGCAAGCTCACTGACCTGCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq A exon
GTTGTTAAACGTTGTAGCAAAAGTACCGCCGGTCTCACTGTGCTGACTGCCCGCCCGCCTGTGGGAGGCAGTGGCGGCCCCGGGGCCTGGCCACAGCGCCCTCCCAGCAGCCCTCTCCCTCTCCCTTCCTGCAG
Seq C2 exon
CCCATCGGCTGTGACGGGGTGCTTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGCCAGGGGGACGGTAGCAGCTGCACCCACGTGACGGGCAACTATCGCAAGGGGAATGCCCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859:ENST00000354484:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCAGCAAACCGTGTGAC
R:
ATTCCCCTTGCGATAGTTGCC
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development