BtaALTD0002097-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000017113 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr5:28129660-28131565:-
Coord C1 exon
chr5:28131471-28131565
Coord A exon
chr5:28131467-28131470
Coord C2 exon
chr5:28129660-28130369
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
3' ss Seq
CTGTGCCCCCCACCCCCCAGGTG
3' ss Score
10.99
Exon sequences
Seq C1 exon
GCCTTGACCTGGAGCGCCGGGACCAGCGGGGACTGACCGCGCTGATGAAGGCCGCCATGCGGGATCGCTCGGAATGTGTTGCTGCCCTCCTCATG
Seq A exon
GCAG
Seq C2 exon
GTGCTGACTTGACAGCAGTGGATCCCGTCAGGGGAAAGACCGCCCTGGAGTGGGCATTTCTGACAGACAGCTTCGACACGGTGCAGAGGATCCGGCAGCTGCTGCGGCGGCCCCAAGTGGAGCAGCTCAGCCAGCATTATCAGCCTGAGTGGCCAGCCTTGCCCGGGCTCGTGGCCCAGGCTCAGGCCGCCCCGTCTCTCCTAGAGCGACTGCAGGCCACCTTGACCCTCCCCTTTGTCCAGTCTCCTCAGGAAGGGGGTGTCCTGGACCAACTTGTGACCATCACGACCAGCCTGGCCAGTCCTTTCCTCACCACCGCCTGCCATACCCTGTGCCCTGACCACCCCCCTGCACTGGGAACCCGAAGGAAGTCTGTTCCAGAGCTGCTAGGCACTGCCCCGCCCCCTCCCCCAGCCCCCCAGCCCCCTCAGGAAGTTCCCGGCCCCCGGGTCTTCATCCCCTACCAGAGCCCTCAGGGTGTGTTGAGCATGTGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017113-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.401
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
A:
NA
C2:
PF0002325=Ank=PD(24.2=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGCTCGGAATGTGTTGCT
R:
GTCAGAAATGCCCACTCCAGG
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development