BtaALTD0002599-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000015278 | ARPC5L
Description
Bos taurus actin related protein 2/3 complex, subunit 5-like (ARPC5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001034737]
Coordinates
chr11:95860020-95864285:+
Coord C1 exon
chr11:95860020-95860120
Coord A exon
NA
Coord C2 exon
chr11:95864185-95864285
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
TAACCGCTGCTGGTGCACAGGGG
3' ss Score
3.97
Exon sequences
Seq C1 exon
GAATTTGATGAGAACAAATTCGTGGACGAGCAGGAGGAGGCGGCGGCGGCGGCGGGCGAGCCAGGCCCGGACCCTAGCGAGGTGGACGGGCTCCTGCGGCA
Seq A exon
NA
Seq C2 exon
GGGACATGCTCCGGGCATTTCACGCAGCCTTGCGGAACTCTCCTGTCAACACCAAGAACCAAGCCGTGAAGGTAAAGGGGGTCGAGCCGCGGCGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015278-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(28.8=84.0),PF093845=UTP15_C=PU(25.4=60.0)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGAGAACAAATTCGTGGACG
R:
GGCTCGACCCCCTTTACCTTC
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development