DreALTD0003586-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000041720 | arpc5la
Description
actin related protein 2/3 complex, subunit 5-like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1453]
Coordinates
chr8:41446324-41449891:+
Coord C1 exon
chr8:41446324-41446424
Coord A exon
chr8:41446425-41446444
Coord C2 exon
chr8:41449821-41449891
Length
20 bp
Sequences
Splice sites
5' ss Seq
GCAATATCC
5' ss Score
-13.3
3' ss Seq
TAACTAACTGTGATGCACAGGGG
3' ss Score
2.37
Exon sequences
Seq C1 exon
CCTCACGGTTCCGGGGAGTCGATATCGACGAGTACGACGAGAATAAATTCGTGGACGACCAAGACGAGGCGGCCGAGCAGCAGGGACCGGACGCGTGTGAG
Seq A exon
GTGGACGATCTCATCAGGCA
Seq C2 exon
GGGACATGATGACAGCATTTCACATCGCCTTGAGGAATCCACCAATCAACTCCAAGAATCCAGCAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041720-0-3,1-3,2-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.247
Domain overlap (PFAM):
C1:
PF036668=NPR3=PU(42.0=92.5),PF046999=P16-Arc=PU(22.4=80.0),PF063236=Phage_antiter_Q=PU(11.7=32.5)
A:
NA
C2:
PF036668=NPR3=FE(26.1=100),PF046999=P16-Arc=FE(16.1=100),PF063236=Phage_antiter_Q=FE(20.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGAGAATAAATTCGTGGACG
R:
GGTGGATTCCTCAAGGCGATG
Band lengths:
110-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]