BtaALTD0003183-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37105806-37107236:+
Coord C1 exon
chr2:37105806-37105899
Coord A exon
chr2:37105900-37106060
Coord C2 exon
chr2:37107022-37107236
Length
161 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAAATGCCAAACTTTTGTAGGCC
3' ss Score
4.23
Exon sequences
Seq C1 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTG
Seq A exon
GTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
Seq C2 exon
GCCAAAACAGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAATCGAGACAATGTTTCCGAGATTTTGCAGATTTTTATGGAAGCACACTGTGGACAGACTGAACTTACTGAAAGCCTGAAGACTAAAGCTTTTCAGGCTCACACTCCAGCACAGAAAGCCTCAGTTCTGGCTTTCCTGATCAATGAACTGGCATGCAGCAAGAGTGTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-41-43,42-43-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
PF0334410=Daxx=PU(0.8=4.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGTTGCCTCGTATTCC
R:
CTGAGGCTTTCTGTGCTGGAG
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development