RnoALTD0004356-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45995257-45996633:-
Coord C1 exon
chr3:45996540-45996633
Coord A exon
chr3:45996379-45996539
Coord C2 exon
chr3:45995257-45995471
Length
161 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAAAATGCCAAATTTCATAGGCA
3' ss Score
4.17
Exon sequences
Seq C1 exon
CCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTG
Seq A exon
GTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
Seq C2 exon
GCAAAAACCGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAACCGAGACAATGTGTCCGAGGTTTTGCAGATTTTCATGGAAGCCCACTGTGGACAGACTGAGCTGACCGAGAGCCTGAAGACTAAAGCGTTTCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTTGTTAATGAGCTGGCGTGTAGCAAGAGTGTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-42-41,43-41-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTGTCTCATGGTGGTGC
R:
CTTGCTACACGCCAGCTCATT
Band lengths:
243-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]