HsaALTD1016432-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159385155-159386607:-
Coord C1 exon
chr2:159386514-159386607
Coord A exon
chr2:159386353-159386513
Coord C2 exon
chr2:159385155-159385369
Length
161 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAAATGCCAAACTTTTATAGGCT
3' ss Score
4.12
Exon sequences
Seq C1 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTG
Seq A exon
GTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATAACAGGATACAAG
Seq C2 exon
GCTAAAACAGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAATCGAGACAATGTTTCCGAGATTTTACAGATATTTATGGAAGCCCACTGTGGACAAACTGAGCTTACTGAAAGTCTGAAGACCAAAGCTTTTCAGGCTCACACTCCAGCACAGAAAGCTTCAGTCCTGGCTTTCCTGATCAATGAACTGGCATGCAGCAAGAGTGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-97-75,98-75,100-75-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCTCATGGTGGTGCAG
R:
TCTTGCTGCATGCCAGTTCAT
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains