BtaALTD0003609-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000046031 | C14H8orf82
Description
Bos taurus chromosome 14 open reading frame, human C8orf82 (C14H8orf82), mRNA. [Source:RefSeq mRNA;Acc:NM_001110184]
Coordinates
chr14:1602518-1603231:+
Coord C1 exon
chr14:1602518-1602618
Coord A exon
chr14:1602619-1602649
Coord C2 exon
chr14:1603183-1603231
Length
31 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CACGGTCTGCTTCTCTGCAGCTT
3' ss Score
9.29
Exon sequences
Seq C1 exon
TGGGCTCTAATCTTGGCGCGGTCCCCGGGAGCCCGGACCTACGCTGGGGGCGGGGGCGTCTCCTACACGCAGGGCCAGAGCCCAGAGCCTCGGACGCGCGA
Seq A exon
GTACTTTTACTATGTGGATCATCAGGGCCAG
Seq C2 exon
CTTTTCCTGGACGACTCCAGAATGAAGAACTTCACCACCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046031-1-0,2-0,3-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.7=46.3)
A:
NA
C2:
PF149561=DUF4505=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAATCTTGGCGCGGTCC
R:
AGTTCTTCATTCTGGAGTCGTCC
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development