BtaINT0027916 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046031 | C14H8orf82
Description
Bos taurus chromosome 14 open reading frame, human C8orf82 (C14H8orf82), mRNA. [Source:RefSeq mRNA;Acc:NM_001110184]
Coordinates
chr14:1602474-1603231:+
Coord C1 exon
chr14:1602474-1602649
Coord A exon
chr14:1602650-1603182
Coord C2 exon
chr14:1603183-1603231
Length
533 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CACGGTCTGCTTCTCTGCAGCTT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GGCGCAGGAGGAGGATGTGGGCGATGAGCGGGGCGCTGCGGCCCTGGGCTCTAATCTTGGCGCGGTCCCCGGGAGCCCGGACCTACGCTGGGGGCGGGGGCGTCTCCTACACGCAGGGCCAGAGCCCAGAGCCTCGGACGCGCGAGTACTTTTACTATGTGGATCATCAGGGCCAG
Seq A exon
GTGGGCGGGGGCGGGGTCTTTACAGTAAGGCAACCCGGCCTCCCGGGTCGCGCTGGAAACACTAGGACGCGCGGCTATGGCCCCAAAGGGTTAGGCCCCCAGAGGACAACGTCCCGCGCCTGGCTGCGCCCTGCGGGCTTTGCATCCCCCGGTCCTGCGTCCCCCGCCGCCGCGCCTGATTTGGAAGCCCTGGCGGTGGCATCCACCATACACACAAGGAAGCAACTCAGAGAGCCTATGCGGAAGAAGTGGCACATCTCATTAGAAACTAAAAGGGAGGAGGGAAGAGGCGCGGAAAGGGCGTGCCAGCTGAGAGAATCTGTGCTTGAGGAAGTAAGGCGGGGGGCGCGGGATAGATGTGGGGAGGTCGGCAGGGCTCCCAAGTTTATCTTCCACGCGCCTCCCTGCACATGGTGTACACAGACGAGCAAAGAAAGCGGACATCAGCCCGGGCTCAGGCCCACCAGGCCCTTCTCGCCCTGGGACAGCTCTCTCGAGCTGTTACTCAAGGGCCACGGTCTGCTTCTCTGCAG
Seq C2 exon
CTTTTCCTGGACGACTCCAGAATGAAGAACTTCACCACCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046031:ENSBTAT00000006544:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(13.7=46.3)
A:
NA
C2:
PF149561=DUF4505=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCAGGAGGAGGATGT
R:
TGAAGCAGGTGGTGAAGTTCT
Band lengths:
222-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development