HsaINT0102657 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:145753408-145754458:-
Coord C1 exon
chr8:145754145-145754458
Coord A exon
chr8:145753457-145754144
Coord C2 exon
chr8:145753408-145753456
Length
688 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCCTGGCCCTCTATCTGCAGCTT
3' ss Score
9.43
Exon sequences
Seq C1 exon
GAGCCCCCGAGGCCCGAGGGAGAGGGAAGAGCGCCGGGCCCGGGTCGCGGAGGCGGGCGCCGCCGGAACGCGAAGCGCGGGGCTACTGCGGGCAGGCGCGAGTTCGCGCAGCACCGCCCCCGGCGTGACCTGCTGGTCGCTTCCGGCGCGGGAGGAGAATGTGGCCGCCTTGCGGGACGCTCCGGACCCTGGCCTTGGCGCGGTCGCGGGGAGCCCGGGCCTGCAGCGGGGATGGGGGCGTTTCCTACACGCAGGGCCAGAGTCCGGAGCCGCGGACCCGCGAGTATTTCTACTACGTGGACCACCAGGGCCAG
Seq A exon
GTGGGCGGGGGCAGGGCCGTTGCTCGAGAGGCGGGGCCGGGAGAGGTCTCTGGGCGGGGCGGGGGGGGGGGCGTGGCTCTGTGGGCGGGACCATTGCTCGAGGGGCGGGGCCGGAGGGACGTTCCAGGGGGTGGGTGGGTGGGCGGGGCCTGCGCGGTGGGCAACCTCGACTCCTCAGAGCTGGAGGAGAGCGCGCTGGAAAGACGGGGAGTTGGGTCGGTCCGGGCCGAGGCTCCTACATGGGCCGCGTCCCTGCTGCGTTGTGCAGCTTCGGACTCTGTCCTACAAGTCCCCAGCCCCGGCGCTGACTTCTCGCCGCTGCCAGGGAGACACCCGGGCCGCCCTGCCTTTTTTTGGAAGCCCTGTCAAAAGGCAGCTGCATGTCCGGGAGGCAGCAGGCCAGGTAGTCTCCGCGGAGGAGGTGGTACAACTGATTACAAACTTGAAAAGAGGGAAAAGGTGCGGGAAAGAATTGGCTGACCAGGGAGCAGAGGTGCGCATAGACGCGGATAAGTCGGCGGGGCCCCCAGGTTTACCTTTCACGCGCCTCCCTGCATGCGGTGTGCACAGACAAGCAGGAAAAGTGGGCTCGGGCCGGTTCAGGACCTCCCGAGCTTCAGGACCTCCTGAGCTTCCCCGCCCCCACCTGCACGCTGGGACTTATCACGGCCTGGCCCTCTATCTGCAG
Seq C2 exon
CTTTTCCTGGATGATTCCAAAATGAAGAATTTCATCACCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
-MGC70857:NM_001001795:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGGAGAGGGAAGAGC
R:
TGAAGCAGGTGATGAAATTCTTCA
Band lengths:
347-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)