HsaINT0102657 @ hg38
Intron Retention
Gene
ENSG00000213563 | C8orf82
Description
chromosome 8 open reading frame 82 [Source:HGNC Symbol;Acc:HGNC:33826]
Coordinates
chr8:144528024-144529132:-
Coord C1 exon
chr8:144528761-144529132
Coord A exon
chr8:144528073-144528760
Coord C2 exon
chr8:144528024-144528072
Length
688 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCCTGGCCCTCTATCTGCAGCTT
3' ss Score
9.43
Exon sequences
Seq C1 exon
GCGGGGCGGACCGGAAGGGGCGTCACCGGCACACGCCTCTCGGAAGGCCAGGGCGGGCGAGCCCCCGAGGCCCGAGGGAGAGGGAAGAGCGCCGGGCCCGGGTCGCGGAGGCGGGCGCCGCCGGAACGCGAAGCGCGGGGCTACTGCGGGCAGGCGCGAGTTCGCGCAGCACCGCCCCCGGCGTGACCTGCTGGTCGCTTCCGGCGCGGGAGGAGAATGTGGCCGCCTTGCGGGACGCTCCGGACCCTGGCCTTGGCGCGGTCGCGGGGAGCCCGGGCCTGCAGCGGGGATGGGGGCGTTTCCTACACGCAGGGCCAGAGTCCGGAGCCGCGGACCCGCGAGTATTTCTACTACGTGGACCACCAGGGCCAG
Seq A exon
GTGGGCGGGGGCAGGGCCGTTGCTCGAGAGGCGGGGCCGGGAGAGGTCTCTGGGCGGGGCGGGGGGGGGGGCGTGGCTCTGTGGGCGGGACCATTGCTCGAGGGGCGGGGCCGGAGGGACGTTCCAGGGGGTGGGTGGGTGGGCGGGGCCTGCGCGGTGGGCAACCTCGACTCCTCAGAGCTGGAGGAGAGCGCGCTGGAAAGACGGGGAGTTGGGTCGGTCCGGGCCGAGGCTCCTACATGGGCCGCGTCCCTGCTGCGTTGTGCAGCTTCGGACTCTGTCCTACAAGTCCCCAGCCCCGGCGCTGACTTCTCGCCGCTGCCAGGGAGACACCCGGGCCGCCCTGCCTTTTTTTGGAAGCCCTGTCAAAAGGCAGCTGCATGTCCGGGAGGCAGCAGGCCAGGTAGTCTCCGCGGAGGAGGTGGTACAACTGATTACAAACTTGAAAAGAGGGAAAAGGTGCGGGAAAGAATTGGCTGACCAGGGAGCAGAGGTGCGCATAGACGCGGATAAGTCGGCGGGGCCCCCAGGTTTACCTTTCACGCGCCTCCCTGCATGCGGTGTGCACAGACAAGCAGGAAAAGTGGGCTCGGGCCGGTTCAGGACCTCCCGAGCTTCAGGACCTCCTGAGCTTCCCCGCCCCCACCTGCACGCTGGGACTTATCACGGCCTGGCCCTCTATCTGCAG
Seq C2 exon
CTTTTCCTGGATGATTCCAAAATGAAGAATTTCATCACCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213563:ENST00000524821:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(54.3=48.1)
A:
NA
C2:
PF149561=DUF4505=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGGAGAGGGAAGAGC
R:
TGAAGCAGGTGATGAAATTCTTCA
Band lengths:
347-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains