BtaALTD0003974-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99326076-99327199:-
Coord C1 exon
chr11:99327099-99327199
Coord A exon
NA
Coord C2 exon
chr11:99326076-99326121
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
TCCCCCAACTCCTTCTCCAGGGT
3' ss Score
8.57
Exon sequences
Seq C1 exon
GAAGTAGGTGTTGCCGGAAGGGGTGAGTCTGATTGGCCGGGCGGGGCCTACGGCGTTCGGCGAACATGGCGGAGCCTGCGAGGAAGCGGCCCTGTGGTCCG
Seq A exon
NA
Seq C2 exon
GGTGAACATGGCCAAAGAGTAGAGTGGCGGAAGTGGAAGCAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTAGGTGTTGCCGGAAG
R:
CTTCCACTTCCGCCACTCTAC
Band lengths:
140-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development