BtaEX0006627 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012485 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr11:99325626-99327141:-
Coord C1 exon
chr11:99327099-99327141
Coord A exon
chr11:99326076-99326121
Coord C2 exon
chr11:99325626-99325751
Length
46 bp
Sequences
Splice sites
3' ss Seq
TCCCCCAACTCCTTCTCCAGGGT
3' ss Score
8.57
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGCGAACATGGCGGAGCCTGCGAGGAAGCGGCCCTGTGGTCCG
Seq A exon
GGTGAACATGGCCAAAGAGTAGAGTGGCGGAAGTGGAAGCAACAGA
Seq C2 exon
AAAAAGAGGAGAAAAAGAAGTGGAAGGATCTCAAGATGACAAAGAAACTGGAGCGGCAGCGAGCGCAGGAGGAACAGGCAAAGCGCCAACAGGAGGAAGAGGCAGCTGCCCAGAGCGAGGATCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012485_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.750 C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGCGGCCCTGTGG
R:
CGATCCTCGCTCTGGGCAG
Band lengths:
146-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development