MmuEX6100206 @ mm10
Exon Skipping
Gene
ENSMUSG00000039660 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30177593-30178442:-
Coord C1 exon
chr2:30178390-30178442
Coord A exon
chr2:30177920-30177965
Coord C2 exon
chr2:30177593-30177721
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCTCCTTACTTGCAGGGT
3' ss Score
10.08
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCGGTGGGCCTGGAAACATGGCGGAGCGCCCGAGGAAGCGTCCGTGTGGTCCG
Seq A exon
GGTGAACATGGCCAAAGGGTTGAATGGCGAAAATGGAAACAGCAGA
Seq C2 exon
AAAAAGAGGAGAAAAAGAAGTGGAAGGACCTCAAGATAATGAAGAAACTGGAGCGGCAGCGTGCCCAAGAGGAAGAGGCTAAACGCCAGGAAGAGGAGGAAGAGGCGGCGGCCCAGAGGAGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-'1-3,'1-1,3-3=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.750 C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGCCTGGAAACATGG
R:
TTAGCCTCTTCCTCTTGGGCA
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types