RnoEX0085612 @ rn6
Exon Skipping
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8750267-8751324:-
Coord C1 exon
chr3:8751093-8751324
Coord A exon
chr3:8750593-8750638
Coord C2 exon
chr3:8750267-8750395
Length
46 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTTCCTTCCTTTCAGGGT
3' ss Score
13.68
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TGCTGTGAACTCGTTGCCCTGGAGACAGGACACCAGAGCTGCAGCCTCCGAACAGGCAGGTGGAGTTTCCGAGCTCCACCTCAGCCTGGCTCCGAGGATACGCCCCACGTTCGGCTGAGTCTCTGATTGGGTAGCTCTGCGGAGGTGTGGCCGGAAGAGGCGTGACTATTGGCAGGCGCGTGTTTTTCCTGGCAACATGGCGGAGCGCCCGGGGAAGCGTCCCTGTGGCCCG
Seq A exon
GGTGAACACGGCCAAAGGGTTGAATGGCGAAAATGGAAGCAGCAGA
Seq C2 exon
AGAAAGAGGAGAAAAAAAAGTGGAAGGACCTCAAGATAATGAAAAAACTGGAGCGGCAGCGTGCCCAAGAGAAACAGGCTAAGCGCCAAGAGGAGGAGGAAGAGGCGGCTGCCCAGAGGAGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-'0-2,'0-1,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.875 C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGGCAGGCGCGTGTTTTT
R:
TAGCCTGTTTCTCTTGGGCAC
Band lengths:
147-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]