DreEX0001420 @ danRer10
Exon Skipping
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3645234-3646185:+
Coord C1 exon
chr21:3645234-3645320
Coord A exon
chr21:3645472-3645511
Coord C2 exon
chr21:3646066-3646185
Length
40 bp
Sequences
Splice sites
3' ss Seq
TATAATATTTGCATTTGTAGGGC
3' ss Score
8.09
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTTCATTGTGAGTGTAACACACGTAACAGCATGGCTGATGAACCCTCAGAGAAGAAAAATAAACCAAACACACTCTCAAATAAAGAG
Seq A exon
GGCGAAGAGAGAAAAAACTGGAAGAAATGGAAAGAACAAA
Seq C2 exon
AGAAAGAAGAGAAGCGGCGACGAAAAGAGACCAAACTCATCCAGCAGCTGGAGAAACAGAAGCTGAAGAAAGAGGAGGAAAATCAACAGCAGGTTAAACAGGAAGAGAAGGAAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.772
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACACGTAACAGCATGGCT
R:
GCTTCTGTTTCTCCAGCTGCT
Band lengths:
135-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]