GgaEX0027595 @ galGal4
Exon Skipping
Gene
ENSGALG00000004622 | C17H9ORF114
Description
uncharacterized protein LOC417203 [Source:RefSeq peptide;Acc:NP_001264604]
Coordinates
chr17:5283675-5284089:-
Coord C1 exon
chr17:5284048-5284089
Coord A exon
chr17:5283931-5283973
Coord C2 exon
chr17:5283675-5283800
Length
43 bp
Sequences
Splice sites
3' ss Seq
AACGGCCGCTGTGCCCGCAGGTT
3' ss Score
10.1
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
ATGGCGGACGGCAGCGAGGCGAAGCGGCCGAAAGGCGTGCAG
Seq A exon
GTTGAGGACAGGAAGGTGAACTGGCGGCGCTGGAAGCAGGAGA
Seq C2 exon
GGAAAGCAGAGAAGAAGAAATGGAAGGAGCTGAACCTGCTGAAGAAGCTGGAAAAGCAGCGGGTGCGGGAGCTGGCCGAGAAACAGGCTGAGGAGGAGCAGCAGCAGCAGGAGGAGGAGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.000 C2=0.419
Domain overlap (PFAM):
C1:
PF093445=Cas_CT1975=PU(9.8=78.6)
A:
PF093445=Cas_CT1975=FE(12.5=100)
C2:
PF093445=Cas_CT1975=FE(37.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]