MmuEX6100206 @ mm9
Exon Skipping
Gene
ENSMUSG00000039660 | D2Wsu81e
Description
DNA segment, Chr 2, Wayne State University 81, expressed [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30033113-30033975:-
Coord C1 exon
chr2:30033910-30033975
Coord A exon
chr2:30033440-30033485
Coord C2 exon
chr2:30033113-30033241
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCTCCTTACTTGCAGGGT
3' ss Score
10.08
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
AACTGGCAGGCGCGCGGTGGGCCTGGAAACATGGCGGAGCGCCCGAGGAAGCGTCCGTGTGGTCCG
Seq A exon
GGTGAACATGGCCAAAGGGTTGAATGGCGAAAATGGAAACAGCAGA
Seq C2 exon
AAAAAGAGGAGAAAAAGAAGTGGAAGGACCTCAAGATAATGAAGAAACTGGAGCGGCAGCGTGCCCAAGAGGAAGAGGCTAAACGCCAGGAAGAGGAGGAAGAGGCGGCGGCCCAGAGGAGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.823 C2=0.638
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGCCTGGAAACATGG
R:
TTAGCCTCTTCCTCTTGGGCA
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: