GgaEX0027595 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5911849-5912288:-
Coord C1 exon
chr17:5912230-5912288
Coord A exon
chr17:5912113-5912155
Coord C2 exon
chr17:5911849-5911982
Length
43 bp
Sequences
Splice sites
3' ss Seq
AACGGCCGCTGTGCCCGCAGGTT
3' ss Score
10.1
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GAAACGTGGGGGAGAAGATGGCGGACGGCAGCGAGGCGAAGCGGCCGAAAGGCGTGCAG
Seq A exon
GTTGAGGACAGGAAGGTGAACTGGCGGCGCTGGAAGCAGGAGA
Seq C2 exon
GGAAAGCAGAGAAGAAGAAATGGAAGGAGCTGAACCTGCTGAAGAAGCTGGAAAAGCAGCGGGTGCGGGAGCTGGCCGAGAAACAGGCTGAGGAGGAGCAGCAGCAGCAGGAGGAGGAGGACAAAGGTGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF093445=Cas_CT1975=PU(9.9=65.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGTGGGGGAGAAGATGG
R:
CTGTTTCTCGGCCAGCTCC
Band lengths:
145-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]