BtaALTD0004179-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37874801-37875678:+
Coord C1 exon
chr10:37874801-37874812
Coord A exon
NA
Coord C2 exon
chr10:37875470-37875678
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
TGGGCTCTTCTCTCCCTTAGATG
3' ss Score
10.01
Exon sequences
Seq C1 exon
GTTCCCAAAGAG
Seq A exon
NA
Seq C2 exon
ATGCACGGCAACAAGCAGCACCTGCAGAAGGACTTCTTCCTGTACAATGCCTCCAAGGCTAGGAGCAGAACCTACATCAACATGCGGGAGGTGTCTGAGCGCTTCCGCCTGCCTCCCAGCGAGTACGTCATTGTGCCCTCCACTTACGAGCCCCACCAGGAGGGCGAGTTCATCCTCCGGGTCTTCTCGGAAAAGAGGAACCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-19-19,20-19,21-19-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(1.9=100)
A:
NA
C2:
PF0106717=Calpain_III=FE(44.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development