BtaALTD0006748-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77236611-77237788:+
Coord C1 exon
chr15:77236611-77237375
Coord A exon
NA
Coord C2 exon
chr15:77237680-77237788
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGCGTAGGT
5' ss Score
3.63
3' ss Seq
AGCCGTCTCCTCCTCCGCAGGAA
3' ss Score
10.35
Exon sequences
Seq C1 exon
TGCAATCCCCGCTTTGCCGTGGAGGAGGTGCCCACCCAGCCGCAGCCAGCCGTGGTGGGGCCCCAGCTTTTGGTGGCACCCCTGCTGTTGGCTGGGCTCGTGGGCATGGAAGACGAGGAGGGCTTGCAGAAGGAGGATGTGAGGGTCGCGTTGCCGAGTGCCGCCCAGCCGGGCTCCGGGACCCCAGGGCCATCCCCACCGCCGCCCCGCAGCGCGCTGCCCCTGCTGCCCGTTCCGCGCTGGCGCCGGCGCCGGGCCTCCTCCCAGCTGCTGCCCGCAGACGTGGTGAAAGACCATGGGCTCTGGGGCCTGCACGGTCACTACCGACGCCTCAGCCAGCCGCGGCCCGTGAGCCAGAACCCCACCCCAGGGGGTCGAAGAGCCTCGGGTACCGCAGCCGGCCTCGGGATGCCCGCCCGCGTGCGCCCGCTGTGCCGCCGGCGGCAGGTAGCCCTGCGGCGCAAGTCAGCCGGACCCCAGACCTGGAGTGCCCTGCTTGC
Seq A exon
NA
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCTGCTCCTGGGGCCCCGTGCAGCGAGCCTGAGCGGCAGATCCGGAGCACCGTGGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-9-1,10-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.595
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCGGACCCCAGAC
R:
CAGGAGCAGGAGGAGGGG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development