MmuALTD0004202-2/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91784918-91785414:-
Coord C1 exon
chr2:91785384-91785414
Coord A exon
chr2:91785331-91785383
Coord C2 exon
chr2:91784918-91785026
Length
53 bp
Sequences
Splice sites
5' ss Seq
TATGTAGGT
5' ss Score
2.16
3' ss Seq
AGCTGTCCTCCTTTCTGTAGGAA
3' ss Score
10.35
Exon sequences
Seq C1 exon
CCGTGTGCGCCCACTGTCTCGCAGACGCCAG
Seq A exon
GTAGCTCTAAGGCGGAAGTCAGCTGGACCCCAGCCCTGGAGCACCCTGCTTAT
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCCGGGGCCCCGTGCGGTGAATCTGAGGAGCAGATCCAGAGCACTGTGGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-6-9,7-9,8-9-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=NA C2=0.730
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCGCCCACTGTCTC
R:
AGTCCACAGTGCTCTGGATCT
Band lengths:
133-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: