BtaALTD0006928-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53764294-53765304:-
Coord C1 exon
chr18:53765087-53765304
Coord A exon
NA
Coord C2 exon
chr18:53764294-53764379
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TCTGTGTTTCTCTTGCCTAGGAG
3' ss Score
10.14
Exon sequences
Seq C1 exon
GCGTCCCCGAGGAGGCTCGAGACCTCATCCAGCAGCTGCTGTGTCCCCCGGAGGTGCGCCTGGGCCGGAACGGAGCAGGGGATTTCCGGAAGCATCCTTTCTTCTTTGGTCTTGAATGGGACAGCCTCCGAGACAGCGTTCCCCCTTTCACGCCAGATTTCGAGGGTGCCACGGACACGTGCAACTTCGATATGGTGGAGGACGGGCTCACTGCCATG
Seq A exon
NA
Seq C2 exon
GAGACGCTGTCAGACATGCAGGAAGGCATGCCGCTGGGCGTCCACCTGCCTTTCGTGGGCTACTCCTACTCCTGCATGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347-10-14,11-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.345
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.4=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCACGCCAGATTTCGA
R:
CCTTCCTGCATGTCTGACAGC
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development