BtaALTD0006928-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53764294-53765304:-
Coord C1 exon
chr18:53765087-53765304
Coord A exon
chr18:53765072-53765086
Coord C2 exon
chr18:53764294-53764379
Length
15 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
TCTGTGTTTCTCTTGCCTAGGAG
3' ss Score
10.14
Exon sequences
Seq C1 exon
GCGTCCCCGAGGAGGCTCGAGACCTCATCCAGCAGCTGCTGTGTCCCCCGGAGGTGCGCCTGGGCCGGAACGGAGCAGGGGATTTCCGGAAGCATCCTTTCTTCTTTGGTCTTGAATGGGACAGCCTCCGAGACAGCGTTCCCCCTTTCACGCCAGATTTCGAGGGTGCCACGGACACGTGCAACTTCGATATGGTGGAGGACGGGCTCACTGCCATG
Seq A exon
GTGAGCGGGGGCGGG
Seq C2 exon
GAGACGCTGTCAGACATGCAGGAAGGCATGCCGCTGGGCGTCCACCTGCCTTTCGTGGGCTACTCCTACTCCTGCATGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347-10-14,11-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.345
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.4=50.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCACGCCAGATTTCGA
R:
CCTTCCTGCATGTCTGACAGC
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development