MmuALTD0004306-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000030409 | Dmpk
Description
dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]
Coordinates
chr7:19088188-19088996:+
Coord C1 exon
chr7:19088188-19088249
Coord A exon
chr7:19088250-19088264
Coord C2 exon
chr7:19088911-19088996
Length
15 bp
Sequences
Splice sites
5' ss Seq
GGGGTACGT
5' ss Score
7.73
3' ss Seq
AGCCCTGTCTGTCTTCCTAGGAG
3' ss Score
9.35
Exon sequences
Seq C1 exon
ACTTCGAGGGTGCCACGGACACATGCAATTTCGATGTGGTGGAGGACCGGCTCACTGCCATG
Seq A exon
GTGAGCGGGGGCGGG
Seq C2 exon
GAGACGCTGTCAGACATGCAGGAAGACATGCCCCTTGGGGTGCGCCTGCCCTTCGTGGGCTACTCCTACTGCTGCATGGCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030409-16-21,17-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.4=53.0)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCGATGTGGTGGAGGACC
R:
AGTAGGAGTAGCCCACGAAGG
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types