HsaALTD0001962-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000104936 | DMPK
Description
dystrophia myotonica protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr19:45774949-45777559:-
Coord C1 exon
chr19:45777342-45777559
Coord A exon
chr19:45777327-45777341
Coord C2 exon
chr19:45774949-45775034
Length
15 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
CATCTGTGTGTCTTGCGCAGGAG
3' ss Score
9.75
Exon sequences
Seq C1 exon
GGGTCCCTGAGGAGGCTCGAGACTTCATTCAGCGGTTGCTGTGTCCCCCGGAGACACGGCTGGGCCGGGGTGGAGCAGGCGACTTCCGGACACATCCCTTCTTCTTTGGCCTCGACTGGGATGGTCTCCGGGACAGCGTGCCCCCCTTTACACCGGATTTCGAAGGTGCCACCGACACATGCAACTTCGACTTGGTGGAGGACGGGCTCACTGCCATG
Seq A exon
GTGAGCGGGGGCGGG
Seq C2 exon
GAGACACTGTCGGACATTCGGGAAGGTGCGCCGCTAGGGGTCCACCTGCCTTTTGTGGGCTACTCCTACTCCTGCATGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104936-17-28,18-28-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.4=53.0)
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTTTACACCGGATTTCG
R:
CTTCCCGAATGTCCGACAGTG
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains