HsaALTD0001962-3/3 @ hg19
Alternative 5'ss
Gene
ENSG00000104936 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:2933]
Coordinates
chr19:46278207-46280817:-
Coord C1 exon
chr19:46280653-46280817
Coord A exon
chr19:46280585-46280652
Coord C2 exon
chr19:46278207-46278292
Length
68 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
CATCTGTGTGTCTTGCGCAGGAG
3' ss Score
9.75
Exon sequences
Seq C1 exon
GGGTCCCTGAGGAGGCTCGAGACTTCATTCAGCGGTTGCTGTGTCCCCCGGAGACACGGCTGGGCCGGGGTGGAGCAGGCGACTTCCGGACACATCCCTTCTTCTTTGGCCTCGACTGGGATGGTCTCCGGGACAGCGTGCCCCCCTTTACACCGGATTTCGAAG
Seq A exon
GTGCCACCGACACATGCAACTTCGACTTGGTGGAGGACGGGCTCACTGCCATGGTGAGCGGGGGCGGG
Seq C2 exon
GAGACACTGTCGGACATTCGGGAAGGTGCGCCGCTAGGGGTCCACCTGCCTTTTGTGGGCTACTCCTACTCCTGCATGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104936-8-12,9-12,10-12-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.4=53.0)
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGCTCGAGACTTCA
R:
CCGAATGTCCGACAGTGTCTC
Band lengths:
180-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)