BtaALTD0007061-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000014319 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr16:40421299-40472474:+
Coord C1 exon
chr16:40421299-40421328
Coord A exon
chr16:40421329-40421344
Coord C2 exon
chr16:40472360-40472474
Length
16 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
3' ss Seq
CGATCTGTGTTCTCTTGAAGGTG
3' ss Score
9.8
Exon sequences
Seq C1 exon
GGAACCAATCTTCCGCCTTCAAGGCAAATT
Seq A exon
GTACGAGCTAAGTTCT
Seq C2 exon
GTGATTCGCAAGGGATGGCTAACCATCAGCAATATTGGCATCATGAAAGGAGGCTCTAAGGGATACTGGTTTGTCCTTACTGCTGAGAGTTTGTCCTGGTACAAAGATGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014319-19-19,20-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATCTTCCGCCTTCAAGG
R:
TCAGCAGTAAGGACAAACCAGT
Band lengths:
113-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development