MmuALTD0004372-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:164161785-164203780:-
Coord C1 exon
chr1:164203751-164203780
Coord A exon
chr1:164203735-164203750
Coord C2 exon
chr1:164161785-164161898
Length
16 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
3' ss Seq
TGATGTCTGCTCTTTTGCAGGTG
3' ss Score
11.1
Exon sequences
Seq C1 exon
GGAACCAATCTTCCGCCTTCACGGCAAATT
Seq A exon
GTACGAGCTAAGTTCT
Seq C2 exon
GTGATTCGTAAGGGCTGGCTGACCGTCAGCAACATTGGCATCATGAAAGGGGGCTCGAAGGGCTACTGGTTTGTCCTCACTGCAGAAAGCCTGTCCTGGTATAAAGACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-18-21,19-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAATCTTCCGCCTTCACG
R:
GGACAAACCAGTAGCCCTTCG
Band lengths:
104-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: