RnoALTD0009359-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:80140001-80179107:-
Coord C1 exon
chr13:80179078-80179107
Coord A exon
chr13:80179062-80179077
Coord C2 exon
chr13:80140001-80140114
Length
16 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
3' ss Seq
TGATGTCTGCTTCTTTGCAGGTG
3' ss Score
10.72
Exon sequences
Seq C1 exon
GGAACCAATCTTCCGCCTTCAAGGCAAATT
Seq A exon
GTACGAGCTAAGTTCT
Seq C2 exon
GTGATTCGGAAGGGCTGGCTGACCGTCAGCAACATTGGCATCATGAAAGGAGGCTCGAAGGGCTACTGGTTTGTCCTCACGGCAGAAAGCTTGTCCTGGTATAAAGACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490-26-25,27-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATCTTCCGCCTTCAAGG
R:
GGACAAACCAGTAGCCCTTCG
Band lengths:
103-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]