BtaALTD0007229-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3432021-3433795:+
Coord C1 exon
chr23:3432021-3432056
Coord A exon
NA
Coord C2 exon
chr23:3433718-3433795
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTGCATTTTTCTCTTCTTAGCCC
3' ss Score
7.42
Exon sequences
Seq C1 exon
CCAAGGGAGCGAGATTTTTTGAAGACCTTACGGTTG
Seq A exon
NA
Seq C2 exon
CCCAGAGAGAAGGGTCGGATGCGTTTTCACAGACTCCAGAATGTACAAATTGCACTTGACTATTTGAAAAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-4-3,5-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(11.1=100)
A:
NA
C2:
PF0030726=CH=FE(28.7=100)
Main Inclusion Isoform:
ENSBTAT00000061451fB2282
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development