HsaALTD1027565-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000151914 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr6:56701888-56703746:-
Coord C1 exon
chr6:56703711-56703746
Coord A exon
NA
Coord C2 exon
chr6:56701888-56701965
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTGCATTTTTCTGTTCTTAGCCC
3' ss Score
7.11
Exon sequences
Seq C1 exon
CCAAGGGAGCGAGATTTTTTGAAGACCTTACGATTG
Seq A exon
NA
Seq C2 exon
CCCAGAGAAAAAGGTCGGATGCGTTTTCACAGACTACAGAATGTACAAATTGCACTTGACTATTTGAAAAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151914-23-32,24-32-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(9.7=100)
A:
NA
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
ENST00000361203fB2201
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains