BtaALTD0007494-1/4 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105463888-105466847:-
Coord C1 exon
chr11:105466740-105466847
Coord A exon
NA
Coord C2 exon
chr11:105463888-105464033
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGC
5' ss Score
6.15
3' ss Seq
CGCGTCTGCTGTGACTGCAGGGC
3' ss Score
5.87
Exon sequences
Seq C1 exon
GTTCTGAAGCCTCTGCGTCGTCTTCGGGCAGTGTGGAGCCAACGGCGCCTGGCGACGGCGGGGGGTACATGGAGGTGCCGCTGGACTCCTTGAATCTCCATGTCCAGG
Seq A exon
NA
Seq C2 exon
GGCTGGCCAACGGTCCTGATGCAGGCGAGACGGATGGCCTCCAGGAGGTGCCCCTCTGCAGCTGCCGGATGGAGACCCCAAAGAGCCGGGAGATCACCACTCTGGCCAACAACCAGTGCATGGCCACAGAGAGTGTGGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148-12-14,13-14,14-14,15-14-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGACTCCTTGAATCTCC
R:
CTCTTTGGGGTCTCCATCCGG
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development