BtaEX0012560 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105463888-105469250:-
Coord C1 exon
chr11:105469130-105469250
Coord A exon
chr11:105466716-105466847
Coord C2 exon
chr11:105463888-105464033
Length
132 bp
Sequences
Splice sites
3' ss Seq
GAGGGCACCTTTGGTTGCAGGTT
3' ss Score
4.5
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
AGTTCTGAGTCCAGCGTCAAGAAGAAGTTCCTCAAGAGGAAGGGGAAGCCTGACAGCCCTTGGATCAAGCCAGCGAGGAAGAGGAGGCGGAGAAGCAAAAAGAAGCCCTGCTCTGTGTTAG
Seq A exon
GTTCTGAAGCCTCTGCGTCGTCTTCGGGCAGTGTGGAGCCAACGGCGCCTGGCGACGGCGGGGGGTACATGGAGGTGCCGCTGGACTCCTTGAATCTCCATGTCCAGGGTGCGCTGACCTCTGACACAGAAG
Seq C2 exon
GGCTGGCCAACGGTCCTGATGCAGGCGAGACGGATGGCCTCCAGGAGGTGCCCCTCTGCAGCTGCCGGATGGAGACCCCAAAGAGCCGGGAGATCACCACTCTGGCCAACAACCAGTGCATGGCCACAGAGAGTGTGGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148_MULTIEX1-6/14=5-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=1.000 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGAGTCCAGCGTCAAGA
R:
CTCTCTGTGGCCATGCACTG
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development