DreEX6083711 @ danRer10
Exon Skipping
Gene
ENSDARG00000026634 | ehmt1b
Description
euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
Coordinates
chr21:14565726-14566752:-
Coord C1 exon
chr21:14566635-14566752
Coord A exon
chr21:14566387-14566530
Coord C2 exon
chr21:14565726-14565871
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTATGTCTGTCCCATCCTAGCTC
3' ss Score
7.67
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
AGTTCAGAATCCAGTTTGAAAAAGAAATGGAAAAAGAAAGCCAAAGGAGATCATGCCTGGCTCCGACCGTCAAGGAAACGCAAGAGGAAATGGAAAGCAAAAACGGACAAGGTTTCTG
Seq A exon
CTCCAGTAACGGAGATCCAGTCTCGGCCAGAAAGCCAGAGCGCCCCATCAGTCCCTACTGCTCACAGAAAGGAGTATAAAGAAGTCCCTCTAGACTCTCTCAATCTAGCAGCACAGGAAGCCTTATTGACATCTCAAAATACAG
Seq C2 exon
CTGCTTCAGGGTCATTGCAGAGCACAGATGCAGACATGGTGCAGGAACTGCCTCTATGCAGCTGTCGAATGGAGACACCCAAGAGTCGAGAGATCCTCACGCTTGCGGACAGGAAGTGTATGGCAACTGAGAGCATTGACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026634-'22-17,'22-14,24-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.857 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGGAAAAAGAAAGCCAAAGGA
R:
CTGGCCGTCAATGCTCTCAG
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]