RnoEX0031255 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2021173-2030864:-
Coord C1 exon
chr3:2030744-2030864
Coord A exon
chr3:2025861-2025998
Coord C2 exon
chr3:2021173-2021318
Length
138 bp
Sequences
Splice sites
3' ss Seq
TATGTGCATTCTGTGTATAGGTT
3' ss Score
8.97
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGTTCTGAATCTAGTATCAAGAAGAAATTTCTCAAGAGAAGAGGGAAGACTGACAGCCCCTGGATCAAACCTGCTCGGAAAAGGAGGCGGAGAAGCAGAAAGAAGCCAAGCAGCATGCTTG
Seq A exon
GTTCCGAGGCTTGTAAGTCATCCCCAGGAAGCATGGAGCAGGCAGCTCTGGGAGACAGCGCTGGGTATATGGAAGTTTCTCTGGATTCCCTGGATCTCCGTGTCAGAGGAATTCTGTCTTCCCAGACGGAAAACGAAG
Seq C2 exon
GGCTGGCCAATGGTCCGGATGTGCTGGAGACGGATGGCCTCCATGAAGTGCCTCTCTGCAGCTGCCGCATGGAAACCCCCAAGAGCCGTGAGATCAGCACCCTGGCCAACAACCAGTGCATGGCCACTGAGAGCGTGGATCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.736 C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATTTCTCAAGAGAAGAGGGA
R:
GTGATCCACGCTCTCAGTGG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]