GgaEX6014858 @ galGal3
Exon Skipping
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2455063-2458953:+
Coord C1 exon
chr17:2455063-2455183
Coord A exon
chr17:2456798-2456929
Coord C2 exon
chr17:2458808-2458953
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATACGTGTGTTTCAATCTAGGTG
3' ss Score
9.95
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGCTCGGAGTCCAGCATCAAGAAGAAGCTGTTGAAGAGGAAAGGAAAGACGGACAGCCCATGGCTGAAACCCACCCGCAAGAGGAGACGGAGGAATAAAAAGAAACAAGCCAATGTGCTAG
Seq A exon
GTGCTGAAGCCTATAAATCATCGTTGGGAGGCAGAGAGGGCTCTGCCCAGGATAACAGCATGGAGTACATGGAGGTGTCTCTGGATTCCTTGGATCTGCGGGTGAAGGGAATCCTCTCCTCGCAGGCGGAAG
Seq C2 exon
GTCTTTCCAATGGCCCTGAAGCAATGGAAGTAGATGGTCTCCAGGAGGTTCCCCTCTGTAGCTGTCGAATGGAAACCCCCAAAAGCAGAGAGATCACCACGCTAGCCAACAACCAGTGCATGGCCACCGAGAGTGTGGATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=0.622 C2=0.223
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGGAGTCCAGCATCAAGA
R:
CCATGCACTGGTTGTTGGCTA
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]