BtaALTD0007792-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112845760-112847876:+
Coord C1 exon
chr5:112845760-112845878
Coord A exon
NA
Coord C2 exon
chr5:112847637-112847876
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GGTGTCACTTGTCCTTCTAGGAT
3' ss Score
10.08
Exon sequences
Seq C1 exon
TTTTCAAACCTGAAGAGTTACGACAGGCACTGATGTCAACACTGGAGGCACTTTACCGACAGGATCCGGAATCCCTTCCCTTCCGTCAGCCTGTGGACCCTCAGCTTCTAGGAATCCCT
Seq A exon
NA
Seq C2 exon
GATTACTTTGATATTGTGAAGAGCCCTATGGATCTTTCTACCATCAAGAGGAAGTTAGACACTGGACAGTATCAGGAGCCCTGGCAGTATGTGGATGACATTTGGCTCATGTTCAACAATGCTTGGTTATATAATCGGAAAACATCACGGGTGTACAAATACTGCTCCAAGCTGTCTGAGGTCTTCGAACAAGAAATTGACCCTGTCATGCAAAGCCTTGGATACTGTTGTGGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198-24-23,25-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=72.5)
A:
NA
C2:
PF0043920=Bromodomain=PD(64.4=70.0),PF060018=DUF902=PU(28.6=15.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCCTCAGCTTCTAGGA
R:
GGGCTCCTGATACTGTCCAGT
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development