DreALTD0007430-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24887029-24893015:-
Coord C1 exon
chr3:24892897-24893015
Coord A exon
NA
Coord C2 exon
chr3:24887029-24887268
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCCGTACGT
5' ss Score
7.7
3' ss Seq
GGTGACCATTCATCTTCCAGGAC
3' ss Score
8.73
Exon sequences
Seq C1 exon
AATTTAAACCAGATGAGCTCCGCCAGGCTTTAATGCCCACTCTGGAAGCTCTGTACAGACAGGACCCAGAGTCGCTGCCCTTCCGGCAGCCGGTGGACCCCCAGTTACTGGGAATACCC
Seq A exon
NA
Seq C2 exon
GACTACTTTGACATTGTGAAAAACCCCATAGACTTGTCCACTATCAAGCGTAAGCTGGACACGGGGCAGTACCAGGAGCCCTGGCAGTATGTGGATGACGTGTGGCTGATGTTCAATAACGCCTGGCTGTATAACAGAAAGACGTCACGGGTTTATAAATACTGCTCCAAACTGGCCGAGGTCTTCGAACAGGAAATAGACCCTGTTATGCAGGAGTTGGGCTACTGCTGTGGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-17-23,18-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PU(33.3=72.5)
A:
NA
C2:
PF0043920=Bromodomain=PD(64.4=70.0),PF060018=DUF902=PU(28.6=15.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGACCCCCAGTTACT
R:
GTCATCCACATACTGCCAGGG
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]