BtaALTD0007823-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33501239-33502031:+
Coord C1 exon
chr13:33501239-33501380
Coord A exon
chr13:33501381-33501384
Coord C2 exon
chr13:33501825-33502031
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CATAATGATTTTACATTTAGCCA
3' ss Score
3.36
Exon sequences
Seq C1 exon
CTTTTAGTTTGGATGCTGAGCAGCCCGATTATGATTTGGATTCTGAAGATGAAGTATTTGTGAATAAACTGAAGAAGAAAATGGACATCTGCCCATTGCAGTTTGAGGAGATGATTGACCGTCTAGAAAAAGGCAGTGGTCA
Seq A exon
GCAG
Seq C2 exon
CCAGTCAGTCTGCAGGAAGCCAAACTACTGCTAAAAGAAGACGATGAATTAATTAGAGAAGTTTATGAGTACTGGATTAAAAAGAGAAAAAACTGTCGAGGTCCGTCTCTTATCCCATCAGTAAAACAAGAGAAGCGAGATGGTTCGAGCACAAATGATCCTTACGTGGCTTTTAGAAGACGTACTGAAAAAATGCAGACGCGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552-5-3,6-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAAATGGACATCTGCCCA
R:
AGCAGTAGTTTGGCTTCCTGC
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development