RnoALTD0010446-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57321873-57323036:-
Coord C1 exon
chr17:57322895-57323036
Coord A exon
chr17:57322891-57322894
Coord C2 exon
chr17:57321873-57322079
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CGAAATGGTTTTACATTTAGCCA
3' ss Score
2.75
Exon sequences
Seq C1 exon
CTTTCAGCTTGGACGCTGAGCAGCCTGATTACGACCTGGATTCTGAGGATGAAGTCTTTGTGAATAAACTGAAGAAGAAAATGGACATCTGCCCAGTGCAGTTTGAGGAGATGATTGACCGGTTAGAAAAAGGCAGCGGTCA
Seq A exon
GCAG
Seq C2 exon
CCAGTCAGTCTGCAGGAAGCCAAACTACTTCTAAAAGAAGATGATGAGTTAATTAGAGAAGTTTATGAATACTGGATTAAAAAGAGGAAAACCTGCCGGGGGCCATCACTTATCCCGTCGGTAAAACAGGAAAAACGAGATGGTTCTAGCACAAATGATCCTTATGTGGCTTTTAGAAGACGAACTGAGAAAATGCAAACTCGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834-7-4,8-4,9-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(44.4=89.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGACATCTGCCCAGTGC
R:
GTAGTTTGGCTTCCTGCAGACT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]